Uncorrected UMAP
scVI corrected UMAP
Old annotation
Present clones arranged from largest to smallest.
Number of clones (not cells!) per type and sample
Percentage of T cells that have a TCR (TRUE) and don’t have one (FALSE).
Note that here we are including NKs in the T cell compartment, which are not expected to have TCRs.
##
## FALSE TRUE
## 9460 40187
##
## FALSE TRUE
## 19.05 80.95
Clone size by cell type & disease
Top 10 clones by sample